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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_14451333_14452051_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14451333 - 14452051
Intron Length:
719

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTTCTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTGAA
U12 Branch Point Sequence:
CCTTCCTGAATG
Flanking Amino Acid:
DGIWYTAKITDIDSGYYTVK
Intron Amino Acid Position:
258

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
74
36.6
Major BPS
69.6
0.49
1
59.5
39
Major PPT
84.3
0.77
0.7
77.7
31.1
Minor 5ss
29.1
-2.4
3.2
37.3
42.5
Minor BPS
64
0.3
1.6
63.83
44.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014707
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015331
14446677 - 14453733
7057