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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_14452186_14453095_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14452186 - 14453095
Intron Length:
910

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAAGGAG
5'SS Class:
major
3'SS Sequence:
CCTTCTCCGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
TTCCTATTCACC
Flanking Amino Acid:
DDKCRFKENCRFSHGQVVSV
Intron Amino Acid Position:
213

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.8
0.47
1.1
57.6
41.5
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
72.8
0.51
0.9
69.2
31.4
Minor 5ss
28.4
-2.5
3.6
37.5
47.3
Minor BPS
48.5
-0.1
2
64.34
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014707
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015331
14446677 - 14453733
7057