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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_14455174_14455568_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14455174 - 14455568
Intron Length:
395

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
CGTTCCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TACTTTTTCACG
Flanking Amino Acid:
ILGLDNAGKTTFLEQTKTRF
Intron Amino Acid Position:
32

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
0.9
81.7
31.9
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
83.7
0.76
0.8
80.6
31.4
Minor 5ss
33.7
-1.9
3.4
49.9
46.4
Minor BPS
52.8
-0
1.8
59.25
43.2

Associated Gene:

Gene:
ARFRP1
Ensembl Gene ID:
ENSAPLG00000014398
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014998
14455074 - 14464953
9880