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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_14455657_14456151_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14455657 - 14456151
Intron Length:
495

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
TCTTTCCCTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAC
U12 Branch Point Sequence:
TTTCACTGGATT
Flanking Amino Acid:
SKITTTVGLNIGTIDVGKTR
Intron Amino Acid Position:
61

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
77.3
32.8
Major BPS
81.3
0.78
0.8
83.4
26.1
Major PPT
81.8
0.72
0.7
74.4
30.9
Minor 5ss
37.2
-1.4
2.8
47.9
41.8
Minor BPS
56.3
0.28
1.7
78.75
37

Associated Gene:

Gene:
ARFRP1
Ensembl Gene ID:
ENSAPLG00000014398
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014998
14455074 - 14464953
9880