Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_14462544_14464059_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

14462544 - 14464059

Intron Length:

1516

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTGAGTATG

5'SS Class:

strong_major

3'SS Sequence:

CTCATTTCCTTAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TGTGTTTTAATC

Flanking Amino Acid:

CLTQACSALTGKGVNEGIEW

Intron Amino Acid Position:

173

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.6

0.79

0.9

77.8

38.7

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

74.1

0.54

0.8

72.9

31.8

Minor 5ss

33.5

-1.9

2.8

34.2

41.4

Minor BPS

65.3

0.46

1.3

69.9

36.2

Associated Gene:

Gene:

ARFRP1

Ensembl Gene ID:

ENSAPLG00000014398

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014998

14455074 - 14464953

9880