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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_14477580_14479338_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
14477580 - 14479338
Intron Length:
1759

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTCCGGCCG
5'SS Class:
weak_major
3'SS Sequence:
TTTCACCCCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTCCCCCTAACC
Flanking Amino Acid:
NSTQGPGEHQAPGDEDCEQA
Intron Amino Acid Position:
192

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
52.3
0.06
1.4
40.2
39.8
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
75.6
0.58
0.8
66.5
35.3
Minor 5ss
25
-2.9
3.1
22.9
36.7
Minor BPS
66.7
0.51
1.7
77.17
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014394
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014991
14477099 - 14481990
4892