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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_14479549_14481626_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14479549 - 14481626
Intron Length:
2078

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTATC
5'SS Class:
strong_major
3'SS Sequence:
TGTCCCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
ACCTCCTGATGT
Flanking Amino Acid:
CPPGSGVVKPGTPFEDTQCR
Intron Amino Acid Position:
122

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.4
0.95
0.8
87
27.8
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
72.8
0.51
0.8
66.2
30
Minor 5ss
46.4
-0.4
2.5
62.6
42.2
Minor BPS
47
-0.1
2
62.75
47.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014394
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014991
14477099 - 14481990
4892