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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_14501121_14502064_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14501121 - 14502064
Intron Length:
944

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGGGTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTGGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTTAT
U12 Branch Point Sequence:
TTTATGTTAACT
Flanking Amino Acid:
ERPEDFHLLRRFYMFVRPHH
Intron Amino Acid Position:
755

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
79.7
33.7
Major BPS
76.3
0.65
1
67.3
39.3
Major PPT
77
0.61
1
76.2
37.8
Minor 5ss
36.9
-1.5
3.8
55.6
43.2
Minor BPS
66.3
0.59
2.1
88.22
36.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011075
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043487
14497805 - 14527322
29518
ENSAPLT00000033952
14495777 - 14527322
31546
ENSAPLT00000026895
14495777 - 14527322
31546
ENSAPLT00000011676
14495777 - 14528486
32710