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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_14502308_14504223_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14502308 - 14504223
Intron Length:
1916

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACACTTC
5'SS Class:
major
3'SS Sequence:
CTTTGTTTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
CCCTACTCATCT
Flanking Amino Acid:
FHLTTGLTSAGDNAGQAPSK
Intron Amino Acid Position:
674

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1.1
66.7
40.1
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
85.4
0.8
0.8
83.9
31.1
Minor 5ss
46.7
-0.3
3.2
67.5
43.9
Minor BPS
45.9
-0.2
2
60.67
48.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011075
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043487
14497805 - 14527322
29518
ENSAPLT00000026895
14495777 - 14527322
31546
ENSAPLT00000011676
14495777 - 14528486
32710