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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_14502308_14507245_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14502308 - 14507245
Intron Length:
4938

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGACAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTTTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
CCCTACTCATCT
Flanking Amino Acid:
EDEKKHILLRGDNAGQAPSK
Intron Amino Acid Position:
570

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
69.6
36.5
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
85.4
0.8
0.8
83.9
31.1
Minor 5ss
37.4
-1.4
3
47.2
48.2
Minor BPS
45.9
-0.2
2
60.67
48.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011075
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033952
14495777 - 14527322
31546