About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_14504341_14507245_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14504341 - 14507245
Intron Length:
2905

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGACAA
5'SS Class:
strong_major
3'SS Sequence:
CTTGATTTAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAACAT
U12 Branch Point Sequence:
CTTGATTTAACA
Flanking Amino Acid:
EDEKKHILLREGKKSQQKTT
Intron Amino Acid Position:
570

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
69.6
36.5
Major BPS
71
0.52
1.1
77.7
35.3
Major PPT
74.3
0.55
1
69.3
40.4
Minor 5ss
37.4
-1.4
3
47.2
48.2
Minor BPS
62.6
0.39
1.6
71.69
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011075
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026895
14495777 - 14527322
31546