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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_14512211_14513162_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14512211 - 14513162
Intron Length:
952

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGGTTTG
5'SS Class:
strong_major
3'SS Sequence:
CTGTGTTATGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TTTTTGTCATCT
Flanking Amino Acid:
HVPSLKRKRIVMPVSGDGAS
Intron Amino Acid Position:
432

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
78.8
38.3
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
74.7
0.56
1
69.4
40.8
Minor 5ss
42.4
-0.8
3.1
57.3
47.4
Minor BPS
48.8
-0
2.4
79.56
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011075
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011676
14495777 - 14528486
32710
ENSAPLT00000043487
14497805 - 14527322
29518
ENSAPLT00000033952
14495777 - 14527322
31546
ENSAPLT00000026895
14495777 - 14527322
31546