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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_14513317_14514444_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14513317 - 14514444
Intron Length:
1128

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
ATT|GCAAGTATC
5'SS Class:
major
3'SS Sequence:
AAACTGCTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
ATTTTGTAAACT
Flanking Amino Acid:
STFFRVAQEIMPPPQPQCLS
Intron Amino Acid Position:
381

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.1
0.48
1.4
83.9
30.3
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
67.2
0.39
1
58.8
41.9
Minor 5ss
32.5
-2
4
51.7
39.2
Minor BPS
55.2
0.24
2.3
81.49
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011075
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026895
14495777 - 14527322
31546
ENSAPLT00000011676
14495777 - 14528486
32710
ENSAPLT00000043487
14497805 - 14527322
29518
ENSAPLT00000033952
14495777 - 14527322
31546