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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_14515459_14516180_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14515459 - 14516180
Intron Length:
722

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATAGTG
5'SS Class:
strong_major
3'SS Sequence:
CCACCTATTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
ATAATGTTAATT
Flanking Amino Acid:
EMKRSCVGAQYLSGREWYNQ
Intron Amino Acid Position:
301

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
71.8
38.2
Major BPS
84.4
0.85
1
84
34.5
Major PPT
72.2
0.5
0.9
65.4
34.4
Minor 5ss
34.1
-1.8
3.5
47.2
48.2
Minor BPS
52
0.14
2
71.47
39.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011075
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043487
14497805 - 14527322
29518
ENSAPLT00000033952
14495777 - 14527322
31546
ENSAPLT00000026895
14495777 - 14527322
31546
ENSAPLT00000011676
14495777 - 14528486
32710