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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_14520020_14522312_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14520020 - 14522312
Intron Length:
2293

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAGCAG
5'SS Class:
major
3'SS Sequence:
TTCTTGTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATACAA
U12 Branch Point Sequence:
TGGTACTTGACT
Flanking Amino Acid:
GAVLTSTYERRFSEDYLSSL
Intron Amino Acid Position:
158

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
62.9
43.2
Major BPS
57
0.17
0.9
65
30.8
Major PPT
84.4
0.77
0.8
80.5
31.5
Minor 5ss
29.5
-2.4
3.3
37.6
47.1
Minor BPS
68.9
0.68
1.5
81.22
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011075
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026895
14495777 - 14527322
31546
ENSAPLT00000011676
14495777 - 14528486
32710
ENSAPLT00000043487
14497805 - 14527322
29518
ENSAPLT00000033952
14495777 - 14527322
31546