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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_14522427_14522585_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14522427 - 14522585
Intron Length:
159

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTACC
5'SS Class:
strong_major
3'SS Sequence:
CCTCTTTCTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTATGAC
U12 Branch Point Sequence:
GTGAGTATGACT
Flanking Amino Acid:
PLSSFTMEMQIPFPVSLENP
Intron Amino Acid Position:
120

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
1
80.9
31.3
Major BPS
57
0.17
1.3
51.4
43.9
Major PPT
85.9
0.81
0.7
84
24.1
Minor 5ss
39.4
-1.2
2.7
51.9
37.5
Minor BPS
44
-0.3
2
61.26
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011075
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043487
14497805 - 14527322
29518
ENSAPLT00000033952
14495777 - 14527322
31546
ENSAPLT00000026895
14495777 - 14527322
31546
ENSAPLT00000011676
14495777 - 14528486
32710