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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_14522719_14526167_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14522719 - 14526167
Intron Length:
3449

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATAGGAC
5'SS Class:
major
3'SS Sequence:
TTATTTGATACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
TTCTCTTTATTT
Flanking Amino Acid:
VWDSSAAKKQGKTLSYWCFS
Intron Amino Acid Position:
76

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1
62.5
36.1
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
78
0.63
1
73.1
41.1
Minor 5ss
35
-1.7
3.6
48.7
47.8
Minor BPS
69.4
0.69
1.5
83.14
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011075
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043487
14497805 - 14527322
29518
ENSAPLT00000033952
14495777 - 14527322
31546
ENSAPLT00000026895
14495777 - 14527322
31546
ENSAPLT00000011676
14495777 - 14528486
32710