About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_14568512_14569428_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14568512 - 14569428
Intron Length:
917

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGTG
5'SS Class:
strong_major
3'SS Sequence:
CTCCCTCCTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTGCAT
U12 Branch Point Sequence:
TTCCCACTGACG
Flanking Amino Acid:
CPGINVKCVQFNDRLISPKE
Intron Amino Acid Position:
107

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
73
38.2
Major BPS
57.3
0.18
1.6
71.4
45.1
Major PPT
78.8
0.65
0.7
72.8
25.4
Minor 5ss
27.4
-2.6
3.5
36.8
47.7
Minor BPS
47.1
-0.3
2
58.57
42.7

Associated Gene:

Gene:
GMEB2
Ensembl Gene ID:
ENSAPLG00000010816
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011266
14567456 - 14578829
11374