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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_14572238_14573902_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14572238 - 14573902
Intron Length:
1665

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGGTGCA
5'SS Class:
major
3'SS Sequence:
CTATTGGTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGCTAT
U12 Branch Point Sequence:
TTTCTTGCTATT
Flanking Amino Acid:
YIPLTPASADVNGSPATITI
Intron Amino Acid Position:
194

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1
67.7
37.6
Major BPS
58.7
0.22
1.5
58.5
47.9
Major PPT
75.2
0.57
1
68.8
41.7
Minor 5ss
31.7
-2.1
3.3
37.8
42.2
Minor BPS
40.8
-0.6
2.3
64.5
40.4

Associated Gene:

Gene:
GMEB2
Ensembl Gene ID:
ENSAPLG00000010816
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011266
14567456 - 14578829
11374