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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_1458467_1459270_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1458467 - 1459270
Intron Length:
804

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTTTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATAAAAT
U12 Branch Point Sequence:
TACAGATAAAAT
Flanking Amino Acid:
IENIYSATKTGKESCFERIM
Intron Amino Acid Position:
475

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83.4
27.8
Major BPS
61.8
0.29
1.1
67.7
34.6
Major PPT
85.1
0.79
0.8
83.8
31.2
Minor 5ss
33.8
-1.9
2.9
41.4
44.7
Minor BPS
39.9
-0.6
2.2
56.31
45.3

Associated Gene:

Gene:
EYA2
Ensembl Gene ID:
ENSAPLG00000009249
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009703
1454257 - 1545787
91531
ENSAPLT00000030131
1411509 - 1518739
107231
ENSAPLT00000028594
1454257 - 1552764
98508
ENSAPLT00000025284
1411509 - 1518739
107231
ENSAPLT00000046772
1454257 - 1552764
98508
ENSAPLT00000021341
1411509 - 1552764
141256
ENSAPLT00000044559
1411509 - 1518739
107231