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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_14600097_14600578_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14600097 - 14600578
Intron Length:
482

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGACGA
5'SS Class:
major
3'SS Sequence:
TCTCTTTATTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TGTCTCTTTATT
Flanking Amino Acid:
LRDAKSKPELREIILHHRIR
Intron Amino Acid Position:
2448

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
62.6
43.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
85.4
0.8
0.8
84.6
29
Minor 5ss
29.9
-2.3
3.3
39.1
46.1
Minor BPS
61.5
0.44
1.6
77.87
38.2

Associated Gene:

Gene:
HELZ2
Ensembl Gene ID:
ENSAPLG00000010386
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035927
14582661 - 14604479
21819
ENSAPLT00000010833
14582661 - 14604479
21819