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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_14600696_14601263_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14600696 - 14601263
Intron Length:
568

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
CATTGACCATCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TCTTCATTGACC
Flanking Amino Acid:
GKEITEAEIKSYKRDLTEAR
Intron Amino Acid Position:
2487

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
83.2
30.8
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
64.2
0.32
1
60.6
40.2
Minor 5ss
29.7
-2.3
2.6
33.7
41.6
Minor BPS
71.1
0.65
1.6
79.16
36.3

Associated Gene:

Gene:
HELZ2
Ensembl Gene ID:
ENSAPLG00000010386
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010833
14582661 - 14604479
21819
ENSAPLT00000035927
14582661 - 14604479
21819