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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_1461259_1463640_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1461259 - 1463640
Intron Length:
2382

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGGAT
5'SS Class:
strong_major
3'SS Sequence:
CTCCTTCTCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TTCTAATGACCT
Flanking Amino Acid:
VSSDDNGQDLSTYNFSADGF
Intron Amino Acid Position:
342

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
74.8
35.2
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
79.7
0.67
0.7
72.1
32.5
Minor 5ss
37
-1.5
3.6
54.5
49.7
Minor BPS
46.4
-0.1
2.1
71.17
45.1

Associated Gene:

Gene:
EYA2
Ensembl Gene ID:
ENSAPLG00000009249
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028594
1454257 - 1552764
98508
ENSAPLT00000025284
1411509 - 1518739
107231
ENSAPLT00000046772
1454257 - 1552764
98508
ENSAPLT00000021341
1411509 - 1552764
141256
ENSAPLT00000044559
1411509 - 1518739
107231
ENSAPLT00000009703
1454257 - 1545787
91531
ENSAPLT00000030131
1411509 - 1518739
107231