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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_14630849_14637363_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
14630849 - 14637363
Intron Length:
6515

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTACCGGCA
5'SS Class:
weak_major
3'SS Sequence:
GTTCGTGATGGAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCGTGAT
U12 Branch Point Sequence:
TGGTTCGTGATG
Flanking Amino Acid:
KGTDPPLPPPRSARGGDLNQ
Intron Amino Acid Position:
107

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
56.7
0.16
1.3
49.1
41.8
Major BPS
68.7
0.46
1.3
59.3
47.1
Major PPT
48.6
-0
1.8
54.2
45
Minor 5ss
34.5
-1.8
3.7
47.2
48.3
Minor BPS
47.1
-0.3
2.1
53.89
42

Associated Gene:

Gene:
STK35
Ensembl Gene ID:
ENSAPLG00000010202
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010628
14630187 - 14639586
9400