Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_1463700_1469562_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1463700 - 1469562

Intron Length:

5863

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTATGTAGC

5'SS Class:

strong_major

3'SS Sequence:

ATACGCTTCTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTCAT

U12 Branch Point Sequence:

TATTTATTTACT

Flanking Amino Acid:

DTHLFFNDLEDCDQIHIDDV

Intron Amino Acid Position:

323

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.7

0.89

0.9

77.9

36.9

Major BPS

100

1.24

0.5

100

Major PPT

69.9

0.45

0.9

65.9

Minor 5ss

42.2

-0.9

2.5

54.4

42.8

Minor BPS

60.6

0.41

1.9

82.01

39.1

Associated Gene:

Gene:

EYA2

Ensembl Gene ID:

ENSAPLG00000009249

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009703

1454257 - 1545787

91531

ENSAPLT00000044559

1411509 - 1518739

107231

ENSAPLT00000028594

1454257 - 1552764

98508

ENSAPLT00000025284

1411509 - 1518739

107231

ENSAPLT00000021341

1411509 - 1552764

141256

ENSAPLT00000046772

1454257 - 1552764

98508