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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_14643982_14644196_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14643982 - 14644196
Intron Length:
215

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
CTGTGTCTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGGTGAT
U12 Branch Point Sequence:
GTGATGCCAGCG
Flanking Amino Acid:
HGSESSVRPLMCLWECQGSS
Intron Amino Acid Position:
115

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
76.7
31.8
Major BPS
49.3
-0
1.5
42.8
49.4
Major PPT
79.3
0.66
0.9
73
37.4
Minor 5ss
30
-2.3
3.2
38.4
40.8
Minor BPS
30.8
-1.5
2.2
33.5
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022491
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022181
14636715 - 14645156
8442