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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_14648361_14648470_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14648361 - 14648470
Intron Length:
110

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTGAC
U12 Branch Point Sequence:
TCGGTCTGACCC
Flanking Amino Acid:
QSKGKSSPSARLHEPEKSSG
Intron Amino Acid Position:
438

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.6
1.07
0.7
84.1
26.6
Major BPS
63.7
0.34
1.2
57
41.8
Major PPT
86
0.81
0.7
77.5
31.2
Minor 5ss
33
-1.9
3.1
41.6
45
Minor BPS
46.2
-0.3
1.8
53.88
44.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019511
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032336
14646152 - 14656191
10040
ENSAPLT00000019764
14646152 - 14656191
10040
ENSAPLT00000010416
14647370 - 14659960
12591