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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_14649590_14649678_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14649590 - 14649678
Intron Length:
89

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGGCT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCTTCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTCCAT
U12 Branch Point Sequence:
CCAGTTCCATCC
Flanking Amino Acid:
RSYHLSQILRVPPKVVMEPP
Intron Amino Acid Position:
284

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75.6
33.8
Major BPS
59.5
0.24
1.5
72.5
43.5
Major PPT
83.7
0.76
0.7
76.3
32.3
Minor 5ss
26.4
-2.7
3.5
38.5
46.7
Minor BPS
34.6
-1.1
1.7
34.69
35.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019511
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010416
14647370 - 14659960
12591
ENSAPLT00000032336
14646152 - 14656191
10040
ENSAPLT00000019764
14646152 - 14656191
10040