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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_14650509_14656105_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14650509 - 14656105
Intron Length:
5597

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGTGC
5'SS Class:
strong_major
3'SS Sequence:
GGTTTGTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCTGAT
U12 Branch Point Sequence:
ACCTGATGGAGT
Flanking Amino Acid:
LVLLSLRPWPGANAQAGFQL
Intron Amino Acid Position:
25

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.7
0.91
0.9
73.9
38
Major BPS
70
0.5
1
59.3
39.1
Major PPT
71.3
0.48
1
61.8
44.4
Minor 5ss
37.1
-1.5
3.3
50.2
46.4
Minor BPS
37.7
-0.8
2.2
50.7
43.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019511
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032336
14646152 - 14656191
10040
ENSAPLT00000019764
14646152 - 14656191
10040