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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_14667370_14667643_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14667370 - 14667643
Intron Length:
274

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAGCG
5'SS Class:
major
3'SS Sequence:
ACCGTTTGCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
ATGCCTTTAACC
Flanking Amino Acid:
DAETPRPPQQQSSEQKDIHY
Intron Amino Acid Position:
223

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
63.4
41.5
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
65.8
0.35
1
59.9
40
Minor 5ss
29.4
-2.4
3.5
38.7
46.6
Minor BPS
72.7
0.69
1.2
74.21
36.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001051
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001037
14667244 - 14669568
2325