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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_14667684_14668088_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14667684 - 14668088
Intron Length:
405

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGGTACC
5'SS Class:
major
3'SS Sequence:
TTTCCCCCAGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAC
U12 Branch Point Sequence:
CTGGCTCTAACA
Flanking Amino Acid:
LSCAGSPGTPSNVRDAETPR
Intron Amino Acid Position:
209

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.57
1.2
70.9
39.4
Major BPS
72.3
0.55
1
73.3
28.9
Major PPT
75.7
0.58
0.8
71.4
28.2
Minor 5ss
32
-2.1
2.7
38.2
39.5
Minor BPS
52.1
0.06
1.8
63.23
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001051
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001037
14667244 - 14669568
2325