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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_14689422_14689879_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14689422 - 14689879
Intron Length:
458

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTATGTAGC
5'SS Class:
major
3'SS Sequence:
ACTGTCGTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTATTGGACA
Flanking Amino Acid:
NAQFLDDIRRGEVPAELRRL
Intron Amino Acid Position:
215

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1
68.8
42.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
73
0.52
1
65.5
40.4
Minor 5ss
41.7
-0.9
2.5
45.6
42.8
Minor BPS
60.2
0.31
1.7
76.15
34.4

Associated Gene:

Gene:
NSFL1C
Ensembl Gene ID:
ENSAPLG00000011229
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023799
14685162 - 14692042
6881
ENSAPLT00000011720
14685162 - 14692108
6947