About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_14690018_14690523_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14690018 - 14690523
Intron Length:
506

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
TTCCTGTTCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TGGTTTTTAACA
Flanking Amino Acid:
AFTGEGQKLGSTAPQVLGTS
Intron Amino Acid Position:
261

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.8
80
29.3
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
81.5
0.71
0.8
79.7
32.2
Minor 5ss
26.1
-2.7
2.9
29.9
43.2
Minor BPS
73.6
0.74
1.2
75.27
36.4

Associated Gene:

Gene:
NSFL1C
Ensembl Gene ID:
ENSAPLG00000011229
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023799
14685162 - 14692042
6881
ENSAPLT00000011720
14685162 - 14692108
6947