Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_1469653_1483197_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1469653 - 1483197

Intron Length:

13545

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAAACTT

5'SS Class:

strong_major

3'SS Sequence:

TCTCCCTCAACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AATTGAA

U12 Branch Point Sequence:

TCTCCCTCAACA

Flanking Amino Acid:

TGTFASRYGKDTTTSVRIGL

Intron Amino Acid Position:

293

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.8

0.77

0.9

77.9

36.7

Major BPS

70.6

0.51

0.9

61.4

36.2

Major PPT

74.4

0.55

0.8

69.7

29.6

Minor 5ss

37.2

-1.4

3.4

56.5

47.6

Minor BPS

70.1

0.63

1.5

77.44

39.2

Associated Gene:

Gene:

EYA2

Ensembl Gene ID:

ENSAPLG00000009249

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025284

1411509 - 1518739

107231

ENSAPLT00000021341

1411509 - 1552764

141256

ENSAPLT00000009703

1454257 - 1545787

91531

ENSAPLT00000046772

1454257 - 1552764

98508

ENSAPLT00000028594

1454257 - 1552764

98508