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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_14740595_14740913_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14740595 - 14740913
Intron Length:
319

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACAGTT
5'SS Class:
major
3'SS Sequence:
TTTGTTAATACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTGTTAATA
Flanking Amino Acid:
EETRKEQDTSEMLIIEEPSS
Intron Amino Acid Position:
406

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1.1
78.9
35.3
Major BPS
100
1.24
0.5
100
0
Major PPT
79.4
0.66
1
74.1
39.5
Minor 5ss
41.9
-0.9
3.5
64.8
46.5
Minor BPS
68.4
0.57
2
82.43
32.9

Associated Gene:

Gene:
RAD21L1
Ensembl Gene ID:
ENSAPLG00000009865
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010299
14737405 - 14753203
15799