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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_14744991_14745511_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14744991 - 14745511
Intron Length:
521

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAGGCTTT
5'SS Class:
major
3'SS Sequence:
TTTTATATTTAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TATTTTATATTT
Flanking Amino Acid:
GDEEAGADMIEILLRDEQNG
Intron Amino Acid Position:
223

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1.1
71.5
41.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
76.6
0.6
1.1
80.7
35.6
Minor 5ss
48.5
-0.1
3.2
69.4
43.7
Minor BPS
50.7
0.1
1.8
73.26
38.1

Associated Gene:

Gene:
RAD21L1
Ensembl Gene ID:
ENSAPLG00000009865
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010299
14737405 - 14753203
15799