About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_14745990_14746403_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14745990 - 14746403
Intron Length:
414

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCCATCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTACAA
U12 Branch Point Sequence:
TTTTTTCCATCA
Flanking Amino Acid:
HDFDTPLPDLNAIDVAEHFT
Intron Amino Acid Position:
125

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
84.2
27.2
Major BPS
58.4
0.21
1.2
67
39.8
Major PPT
86.2
0.81
0.8
86.8
25.8
Minor 5ss
44.5
-0.6
2.8
60
38.4
Minor BPS
47
-0.2
2
67.68
39

Associated Gene:

Gene:
RAD21L1
Ensembl Gene ID:
ENSAPLG00000009865
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010299
14737405 - 14753203
15799