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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_14759524_14759657_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14759524 - 14759657
Intron Length:
134

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTGCT
5'SS Class:
strong_major
3'SS Sequence:
AATTCCTTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
CCTGCTCTGACT
Flanking Amino Acid:
PFGPVGAGRGRPDPDHLPPP
Intron Amino Acid Position:
254

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.9
78.9
33.5
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
79.8
0.67
0.9
70.3
40.3
Minor 5ss
33.9
-1.8
3.5
49.9
46.5
Minor BPS
49.5
0.04
1.8
67.05
44.4

Associated Gene:

Gene:
PSMF1
Ensembl Gene ID:
ENSAPLG00000009663
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010059
14758430 - 14764572
6143