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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_14759817_14761495_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14759817 - 14761495
Intron Length:
1679

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TTCCTCTCCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGCTCAT
U12 Branch Point Sequence:
TTCAGCTCATCT
Flanking Amino Acid:
AVGGEDLDPFGGRSGGMILD
Intron Amino Acid Position:
201

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.76
1
72.2
39.5
Major BPS
70.9
0.52
1.1
71.4
36.6
Major PPT
80.3
0.68
0.7
72.9
31.9
Minor 5ss
30.4
-2.2
3.2
31.9
42.5
Minor BPS
46.1
-0.2
2.2
68.8
47.6

Associated Gene:

Gene:
PSMF1
Ensembl Gene ID:
ENSAPLG00000009663
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010059
14758430 - 14764572
6143