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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_14763755_14764443_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14763755 - 14764443
Intron Length:
689

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGGGTC
5'SS Class:
strong_major
3'SS Sequence:
TGTCCTGTTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTCAG
U12 Branch Point Sequence:
AGGGTCTCAGCA
Flanking Amino Acid:
GYRCLGAGEQPRPDERKSEL
Intron Amino Acid Position:
44

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
73.7
37.1
Major BPS
53.2
0.08
1.7
65.3
43.7
Major PPT
74.7
0.56
0.9
69.3
36.8
Minor 5ss
32.7
-2
3.8
49.3
47.2
Minor BPS
44.4
-0.4
1.8
50.29
41

Associated Gene:

Gene:
PSMF1
Ensembl Gene ID:
ENSAPLG00000009663
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010059
14758430 - 14764572
6143