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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_14790195_14791107_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14790195 - 14791107
Intron Length:
913

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCAGG
5'SS Class:
strong_major
3'SS Sequence:
TTCTATTCTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TTTGTCTTATGC
Flanking Amino Acid:
NEKVVVKILKPVKKKKIKRE
Intron Amino Acid Position:
72

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
68.8
43.8
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
86.7
0.83
0.7
84.9
29.6
Minor 5ss
33.3
-1.9
2.8
39.7
45.9
Minor BPS
52.8
0.07
2
69.18
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006783
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020448
14789011 - 14797942
8932
ENSAPLT00000007097
14788900 - 14795507
6608