About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_14798277_14803583_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14798277 - 14803583
Intron Length:
5307

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCGGCA
5'SS Class:
major
3'SS Sequence:
TCTCTGCCTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TGTTCATTCACC
Flanking Amino Acid:
MDVGELLSYQPNRGTKRPRD
Intron Amino Acid Position:
90

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66
0.38
1.2
57.8
41.5
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
80.6
0.69
0.8
77.2
31.5
Minor 5ss
34
-1.8
3.7
47.9
47.7
Minor BPS
61.6
0.35
2
76.59
39.2

Associated Gene:

Gene:
CTNNBL1
Ensembl Gene ID:
ENSAPLG00000002965
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003036
14798010 - 14843916
45907