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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_14803773_14806082_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14803773 - 14806082
Intron Length:
2310

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAGTGC
5'SS Class:
major
3'SS Sequence:
TCGATTTTGTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCGAT
U12 Branch Point Sequence:
TGCCTTTCGATT
Flanking Amino Acid:
ERDGEEEEEEEEPLDESSVK
Intron Amino Acid Position:
153

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
67.2
39.2
Major BPS
73.7
0.59
1.3
72.5
43.5
Major PPT
68.7
0.42
1
69.3
41.6
Minor 5ss
36.4
-1.5
3.4
50.2
46.4
Minor BPS
47
-0.1
1.4
60.4
37.7

Associated Gene:

Gene:
CTNNBL1
Ensembl Gene ID:
ENSAPLG00000002965
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003036
14798010 - 14843916
45907