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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_14807704_14810856_F

Intron Information:

Intron Rank:
4
Intron Class:
minor
Intron Phase:
1
Intron Coordinates:
14807704 - 14810856
Intron Length:
3153

Sequence Information:

Terminal Dinucleotides:
AT-AC
5'SS Sequence:
CAG|ATATCCTTC
5'SS Class:
strong_minor
3'SS Sequence:
TAACATCCAGCAC|A
3'SS Class:
strong_BPS
U2 Branch Point Sequence:
TTAACAT
U12 Branch Point Sequence:
TTGTCCTTAACA
Flanking Amino Acid:
LLGLLGHDNTDVSIAVVDLL
Intron Amino Acid Position:
235

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
37.8
-0.7
3.5
56.7
43.5
Major BPS
71
0.52
1.1
77.7
35.3
Major PPT
37.1
-0.7
3.1
48.7
39.6
Minor 5ss
93.9
1.46
0.8
94.2
18.2
Minor BPS
90.6
1.27
0.9
91.48
29.8

Associated Gene:

Gene:
CTNNBL1
Ensembl Gene ID:
ENSAPLG00000002965
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003036
14798010 - 14843916
45907