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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_14813118_14814017_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14813118 - 14814017
Intron Length:
900

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
CCTTTCTTCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATGCAT
U12 Branch Point Sequence:
TGTGCCTTTCTT
Flanking Amino Acid:
EEADGVHNTLAIVENMAEFR
Intron Amino Acid Position:
299

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.3
1.04
0.8
79.7
35.4
Major BPS
58.4
0.21
1.3
69.4
37.7
Major PPT
85.2
0.79
0.7
83.7
24.4
Minor 5ss
33
-1.9
3.2
43.9
43.9
Minor BPS
41.8
-0.5
3.6
72.36
44.7

Associated Gene:

Gene:
CTNNBL1
Ensembl Gene ID:
ENSAPLG00000002965
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003036
14798010 - 14843916
45907