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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_14817436_14818216_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14817436 - 14818216
Intron Length:
781

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTGAGTAAT
5'SS Class:
major
3'SS Sequence:
CTTTGTCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCTCCAT
U12 Branch Point Sequence:
TTTTGGGGAAAT
Flanking Amino Acid:
GIDVLLQQLSVFKRHNPSTA
Intron Amino Acid Position:
374

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1.1
76.4
34
Major BPS
52.4
0.06
1.3
64
41.7
Major PPT
83.3
0.75
0.8
77.4
31.4
Minor 5ss
34.9
-1.7
3
52.2
44.4
Minor BPS
39.2
-0.7
2.8
69.82
46.7

Associated Gene:

Gene:
CTNNBL1
Ensembl Gene ID:
ENSAPLG00000002965
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003036
14798010 - 14843916
45907