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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_14818366_14822814_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14818366 - 14822814
Intron Length:
4449

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTACTCGTA
5'SS Class:
major
3'SS Sequence:
TTTCTCTTCGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGTTTAA
U12 Branch Point Sequence:
TGTCCCTGAAAA
Flanking Amino Acid:
EGLQLMNLMLREKKISRSSA
Intron Amino Acid Position:
423

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.7
0.49
1.1
65.4
40.7
Major BPS
63.3
0.33
1.1
55.4
41.7
Major PPT
88.2
0.86
0.6
84.3
23.5
Minor 5ss
38.9
-1.2
3.6
55.9
48.2
Minor BPS
62.7
0.4
1.6
72.75
38

Associated Gene:

Gene:
CTNNBL1
Ensembl Gene ID:
ENSAPLG00000002965
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003036
14798010 - 14843916
45907