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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_14830115_14831191_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14830115 - 14831191
Intron Length:
1077

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TCTGTCCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTTAG
U12 Branch Point Sequence:
TCTTGCTTAGGT
Flanking Amino Acid:
NKFTENDSEKVDRLMELYFK
Intron Amino Acid Position:
517

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.7
0.98
0.7
81.3
32.8
Major BPS
52.3
0.06
1.6
51.4
46
Major PPT
83.2
0.75
0.8
77.1
31.6
Minor 5ss
30.9
-2.2
3.2
39.6
46.4
Minor BPS
50.6
0.1
2.3
75.34
47.4

Associated Gene:

Gene:
CTNNBL1
Ensembl Gene ID:
ENSAPLG00000002965
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003036
14798010 - 14843916
45907