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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_14837875_14843154_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14837875 - 14843154
Intron Length:
5280

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTCCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAA
U12 Branch Point Sequence:
TTCTCTCCCACA
Flanking Amino Acid:
SIKIVRHILKEYAENIGDGK
Intron Amino Acid Position:
614

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
0.9
73.7
33.1
Major BPS
77.9
0.69
0.8
77.9
25.8
Major PPT
81.5
0.71
0.7
76.3
25.9
Minor 5ss
34.6
-1.8
2.7
33.3
41.7
Minor BPS
45.6
-0.3
2.2
63.87
42.8

Associated Gene:

Gene:
CTNNBL1
Ensembl Gene ID:
ENSAPLG00000002965
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003036
14798010 - 14843916
45907