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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_1485688_1487477_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1485688 - 1487477
Intron Length:
1790

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGCTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCTCAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTACAT
U12 Branch Point Sequence:
TTTTCCTCAAAG
Flanking Amino Acid:
NTAGFSAVHQEYSSYPSFPQ
Intron Amino Acid Position:
163

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
69.5
41.1
Major BPS
73.9
0.59
1
81
30.2
Major PPT
77.4
0.62
1
79
27.2
Minor 5ss
41.4
-1
3.3
58.6
46.2
Minor BPS
70.2
0.5
1.7
77.48
39.2

Associated Gene:

Gene:
EYA2
Ensembl Gene ID:
ENSAPLG00000009249
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025284
1411509 - 1518739
107231
ENSAPLT00000046772
1454257 - 1552764
98508
ENSAPLT00000021341
1411509 - 1552764
141256
ENSAPLT00000044559
1411509 - 1518739
107231
ENSAPLT00000009703
1454257 - 1545787
91531
ENSAPLT00000030131
1411509 - 1518739
107231
ENSAPLT00000028594
1454257 - 1552764
98508